Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0803466.2a with 2 members (u3 small nucleolar rna-associated protein 10)

Eukaryota / Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta / Euphyllophyta / Polypodiidae

Completeness score: 1.00

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This HOG has 51 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0803466.3a.11a.8b	200	108	u3 small nucleolar rna-associated protein 10
2	HOG:E0803466.3a.11a.4a	154	90	u3 small nucleolar rna-associated protein 10
3	HOG:E0803466.2a	142	106	u3 small nucleolar rna-associated protein 10
4	HOG:E0803466.3a	132	335	u3 small nucleolar rna-associated protein 10
5	HOG:E0803466.3b	101	152	u3 small nucleolar rna-associated protein 10
6	HOG:E0803466.3a.11a	68	259	u3 small nucleolar rna-associated protein 10
7	HOG:E0803466	33	624	u3 small nucleolar rna-associated protein 10
8	HOG:E0803466.3a.11a.3a	30	15	u3 small nucleolar rna-associated protein 10
9	HOG:E0803466.1b	10	6	u3 small nucleolar rna-associated protein 10
10	HOG:E0803466.1a	8	5	u3 small nucleolar rna-associated protein 10
11	HOG:E0803466.3a.10a	6	3	u3 small nucleolar rna-associated protein 10
12	HOG:E0803466.2a.3c	6	3	u3 small nucleolar rna-associated protein 10
13	HOG:E0803466.2a.3b	6	3	u3 small nucleolar rna-associated protein 10
14	HOG:E0803466.3a.11a.7b	4	2	u3 small nucleolar rna-associated protein 10
15	HOG:E0803466.2a.7b	4	4	u3 small nucleolar rna-associated protein 10
16	HOG:E0803466.2a.7a	4	4	u3 small nucleolar rna-associated protein 10
17	HOG:E0803466.2a.6b	4	2	u3 small nucleolar rna-associated protein 10
18	HOG:E0803466.2a.6a	4	2	u3 small nucleolar rna-associated protein 10
19	HOG:E0803466.2a.3a	4	2	u3 small nucleolar rna-associated protein 10
20	HOG:E0803466.3a.11a.8b.6b	2	1	u3 small nucleolar rna-associated protein 10
21	HOG:E0803466.3a.11a.8b.6a	2	1	u3 small nucleolar rna-associated protein 10
22	HOG:E0803466.3a.11a.8b.5b	2	1	u3 small nucleolar rna-associated protein 10
23	HOG:E0803466.3a.11a.8b.5a	2	1	u3 small nucleolar rna-associated protein 10
24	HOG:E0803466.3a.11a.7a	2	2	u3 small nucleolar rna-associated protein 10
25	HOG:E0803466.3a.11a.6b	2	1	u3 small nucleolar rna-associated protein 10

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